Transcript: lnc-EPB41-2:1

Basic information

LNCipedia transcript ID: lnc-EPB41-2:1 
LNCipedia gene ID: lnc-EPB41-2
Location (hg19): chr1:29479001-29479503
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 320 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000450108.1; RP11-242O24.5-001; OTTHUMT00000010391.1; NONHSAT002011
Alternative gene names: ENSG00000227637.1; RP11-242O24.5; OTTHUMG00000003662.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EPB41-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-EPB41-2:1
4.0 lnc-EPB41-2:1
4.1 lnc-EPB41-2:1
5.0 lnc-EPB41-2:1
5.1 lnc-RAB42-14:1
5.2 lnc-EPB41-2:1