Transcript: lnc-EPCAM-2:2

Basic information

LNCipedia transcript ID: lnc-EPCAM-2:2 
LNCipedia gene ID: lnc-EPCAM-2
Ensembl Gene ID: ENSG00000226087
Ensembl Transcript ID: ENST00000426892
Location (hg19): chr2:47454056-47466364
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 591 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00002889; ENST00000426892; ENST00000426892.1; AC106869.2-001; OTTHUMT00000323596.2; NONHSAT070555
Alternative gene names: XLOC_001462; linc-EPCAM; ENSG00000226087; AC106869.2; ENSG00000226087.1; OTTHUMG00000151712.2; AC073283.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -116.6172 non-coding 
CPAT coding probability 10.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EPCAM-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-EPCAM-2:2
3.1 lnc-EPCAM-2:2
4.0 lnc-EPCAM-2:2
4.1 lnc-EPCAM-2:2
5.0 lnc-EPCAM-2:2
5.1 lnc-TTC7A-7:3
5.2 lnc-EPCAM-2:2