Transcript: lnc-EPG5-5:1

Basic information

LNCipedia transcript ID: lnc-EPG5-5:1 
LNCipedia gene ID: lnc-EPG5-5
Ensembl Gene ID: ENSG00000267193
Ensembl Transcript ID: ENST00000586213
Location (hg19): chr18:43311293-43327180
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 547 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT059115; ENST00000586213.1
Alternative gene names: ENSG00000267193.1; RP11-116O18.3; ENSG00000267193.5; AC023421.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -90.9266 non-coding 
CPAT coding probability 1.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EPG5-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-EPG5-5:1
4.0 lnc-EPG5-5:1
4.1 lnc-EPG5-5:1
5.0 lnc-EPG5-5:1
5.1 lnc-SMAD2-33:1
5.2 lnc-EPG5-5:1