Transcript: lnc-EPHB4-2:1

Basic information

LNCipedia transcript ID: lnc-EPHB4-2:1 
LNCipedia gene ID: lnc-EPHB4-2
Location (hg19): chr7:100388591-100390690
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1998 bp
Exons: 2
Sources: Nielsen et al.,2014
Alternative transcript names: l_3457_chr7:100388590-100389912_adrenal
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 12.8853 non-coding 
CPAT coding probability 79.78% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-EPHB4-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-EPHB4-2:1
4.0 lnc-EPHB4-2:1
4.1 lnc-EPHB4-2:1
5.0 lnc-EPHB4-2:1
5.1 lnc-VGF-16:1
5.2 lnc-EPHB4-2:1