Transcript: lnc-ERCC6L2-1:1

Basic information

LNCipedia transcript ID: lnc-ERCC6L2-1:1 
LNCipedia gene ID: lnc-ERCC6L2-1
Location (hg19): chr9:98577585-98579179
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 400 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00016657
Alternative gene names: XLOC_007476; linc-C9orf102-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score -65.0272 non-coding 
CPAT coding probability 10.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ERCC6L2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C9orf102-1:1
3.1 lnc-C9orf102-1:1
4.0 lnc-C9orf102-1:1
4.1 lnc-C9orf102-1:1
5.0 lnc-C9orf102-1:1
5.1 lnc-FAM120A-83:1
5.2 lnc-ERCC6L2-1:1