Transcript: lnc-ERCC6L2-2:4

Basic information

LNCipedia transcript ID: lnc-ERCC6L2-2:4 
LNCipedia gene ID: lnc-ERCC6L2-2
Location (hg19): chr9:98857280-98864193
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1789 bp
Exons: 6
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00015580; NONHSAT133416
Alternative gene names: XLOC_007477; linc-HABP4-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 5.5801 non-coding 
CPAT coding probability 23.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ERCC6L2-2:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C9orf102-2:2
3.1 lnc-C9orf102-2:2
4.0 lnc-C9orf102-2:2
4.1 lnc-C9orf102-2:2
5.0 lnc-C9orf102-2:2
5.1 lnc-FAM120A-85:4
5.2 lnc-ERCC6L2-2:4