Transcript: lnc-ERCC6L2-5:2

Basic information

LNCipedia transcript ID: lnc-ERCC6L2-5:2 
LNCipedia gene ID: lnc-ERCC6L2-5
Ensembl Gene ID: ENSG00000228142
Ensembl Transcript ID: ENST00000580326
Location (hg19): chr9:98412444-98477979
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 483 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000580326.1; RP11-180I4.2-002; OTTHUMT00000444750.1; NONHSAT133386
Alternative gene names: ENSG00000228142.2; RP11-180I4.2; OTTHUMG00000020285.2; AL354861.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -82.4151 non-coding 
CPAT coding probability 8.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ERCC6L2-5:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C9orf102-5:2
4.0 lnc-C9orf102-5:2
4.1 lnc-C9orf102-5:2
5.0 lnc-C9orf102-5:2
5.1 lnc-FAM120A-78:2
5.2 lnc-ERCC6L2-5:2