Transcript: lnc-ERG28-1:3

Basic information

LNCipedia transcript ID: lnc-ERG28-1:3 
LNCipedia gene ID: lnc-ERG28-1
RefSeq ID: NR_110552
Location (hg19): chr14:76041244-76045931
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2146 bp
Exons: 3
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_110552.1
Alternative gene names: LOC102724153


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 338.2954 coding 
CPAT coding probability 70.48% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ERG28-1:3 yes no no no

Available literature

  1. Mirza (2015), Transcriptomic landscape of lncRNAs in inflammatory bowel disease., Genome Med
  2. Spurlock (2015), Expression and functions of long noncoding RNAs during human T helper cell differentiation., Nat Commun


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-PROX2-16:3
5.1 lnc-PROX2-16:3
5.2 lnc-ERG28-1:3