Transcript: lnc-ERI1-32:24

Basic information

LNCipedia transcript ID: lnc-ERI1-32:24 
LNCipedia gene ID: lnc-ERI1-32
Ensembl Gene ID: ENSG00000248538
Ensembl Transcript ID: ENST00000523747
Location (hg19): chr8:9047015-9060347
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 564 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000523747; ENST00000523747.1; RP11-10A14.5-002; OTTHUMT00000374700.1; NONHSAT124929
Alternative gene names: ENSG00000248538; RP11-10A14.5; ENSG00000248538.2; OTTHUMG00000163661.2; ENSG00000248538.6; AC022784.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -0.8285 non-coding 
CPAT coding probability 0.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ERI1-32:24 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-10A14.4.1-1:7
3.1 lnc-RP11-10A14.4.1-2:7
4.0 lnc-RP11-10A14.4.1-8:11
4.1 lnc-RP11-10A14.4.1-8:11
5.0 lnc-RP11-10A14.4.1-8:11
5.1 lnc-DEFB106A-32:24
5.2 lnc-ERI1-32:24