Transcript: lnc-ERICH1-22:1

Basic information

LNCipedia transcript ID: lnc-ERICH1-22:1 
LNCipedia gene ID: lnc-ERICH1-22
Ensembl Gene ID: ENSG00000253162
Ensembl Transcript ID: ENST00000520815
Location (hg19): chr8:3230875-3232748
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 463 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000520815.1; RP11-279L11.1-001; OTTHUMT00000374664.1; NONHSAT124744
Alternative gene names: ENSG00000253162.1; RP11-279L11.1; OTTHUMG00000163650.1; AC026991.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -83.5745 non-coding 
CPAT coding probability 0.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ERICH1-22:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ERICH1-8:1
4.0 lnc-ERICH1-8:1
4.1 lnc-ERICH1-8:1
5.0 lnc-ERICH1-8:1
5.1 lnc-DEFA1B-57:1
5.2 lnc-ERICH1-22:1