Transcript: lnc-ERICH2-1:13

Basic information

LNCipedia transcript ID: lnc-ERICH2-1:13 
LNCipedia gene ID: lnc-ERICH2-1
Ensembl Gene ID: ENSG00000239467
Ensembl Transcript ID: ENST00000429172
Location (hg19): chr2:171627623-171634252
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 561 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003046; ENST00000429172; ENST00000429172.1; AC007405.6-002; OTTHUMT00000333725.1; ENST00000429172.5
Alternative gene names: XLOC_001748; linc-GAD1-1; ENSG00000239467; AC007405.6; ENSG00000239467.1; OTTHUMG00000154075.1; ENSG00000239467.5; AC007405.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -75.1603 non-coding 
CPAT coding probability 14.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ERICH2-1:13 no no no no

Available literature

  1. Peffers (2015), Transcriptome analysis of ageing in uninjured human Achilles tendon., Arthritis Res. Ther.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC007405.7.1-1:4
3.1 lnc-AC007405.7.1-1:3
4.0 lnc-AC007405.7.1-1:3
4.1 lnc-AC007405.7.1-1:3
5.0 lnc-AC007405.7.1-1:3
5.1 lnc-UBR3-8:17
5.2 lnc-ERICH2-1:13