Transcript: lnc-ERP44-3:2

Basic information

LNCipedia transcript ID: lnc-ERP44-3:2 
LNCipedia gene ID: lnc-ERP44-3
Ensembl Gene ID: ENSG00000237461
Ensembl Transcript ID: ENST00000427039
RefSeq ID: NR_109802
Location (hg19): chr9:102348068-102582171
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1544 bp
Exons: 7
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00015632; ENST00000427039; ENST00000427039.1; RP11-554F20.1-001; OTTHUMT00000053397.1; NONHSAT133693; NR_109802; NR_109802.1
Alternative gene names: XLOC_007808; linc-ALG2-5; ENSG00000237461; RP11-554F20.1; ENSG00000237461.1; OTTHUMG00000020358.1; AL359710.1; LOC101928438


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -119.7298 non-coding 
CPAT coding probability 1.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ERP44-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ERP44-1:2
3.1 lnc-ERP44-3:2
4.0 lnc-ERP44-3:2
4.1 lnc-ERP44-3:2
5.0 lnc-ERP44-3:2
5.1 lnc-ERP44-9:10
5.2 lnc-ERP44-3:2