Transcript: lnc-ERRFI1-1:3

Basic information

LNCipedia transcript ID: lnc-ERRFI1-1:3 
LNCipedia gene ID: lnc-ERRFI1-1
Location (hg19): chr1:8066074-8066784
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 410 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00000467; ENST00000423628.1; ERRFI1-IT1-001; OTTHUMT00000003621.1; NONHSAT000731
Alternative gene names: XLOC_000695; linc-TNFRSF9; ENSG00000225820.1; ERRFI1-IT1; OTTHUMG00000001222.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -3.8918 non-coding 
CPAT coding probability 0.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ERRFI1-1:3 no no no no

Available literature

  1. Malouf (2015), Characterization of long non-coding RNA transcriptome in clear-cell renal cell carcinoma by next-generation deep sequencing., Mol Oncol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ERRFI1-1:2
3.1 lnc-TNFRSF9-1:2
4.0 lnc-ERRFI1-1:3
4.1 lnc-ERRFI1-1:3
5.0 lnc-ERRFI1-1:3
5.1 lnc-CLSTN1-28:2
5.2 lnc-ERRFI1-1:3