Transcript: lnc-ERV3-1-10:17

Basic information

LNCipedia transcript ID: lnc-ERV3-1-10:17 
LNCipedia gene ID: lnc-ERV3-1-10
RefSeq ID: NR_038378
Location (hg19): :-
Strand:
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1962 bp
Exons: 0
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000633579.1; NR_038378.4
Alternative gene names: ENSG00000272693.3; RP11-479O9.4; AC073107.1; LOC441242


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 322.8365 coding 
CPAT coding probability 88.18% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ERV3-1-10:17 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-TRIM74-105:4
5.1 lnc-TRIM74-105:4
5.2 lnc-ERV3-1-10:17