Transcript: lnc-ESM1-1:1

Basic information

LNCipedia transcript ID: lnc-ESM1-1:1 
LNCipedia gene ID: lnc-ESM1-1
RefSeq ID: NR_104662
Location (hg19): chr5:54317127-54319997
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 550 bp
Exons: 3
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00009666; ENST00000371487.3; CTD-2313F11.1-001; OTTHUMT00000367872.1; NONHSAT101461; NR_104662; NR_104662.1
Alternative gene names: XLOC_004823; linc-ESM1; ENSG00000240535.2; CTD-2313F11.1; OTTHUMG00000162200.1; ENSG00000240535.4; LOC102467081


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -235.0799 non-coding 
CPAT coding probability 6.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ESM1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ESM1-1:1
3.1 lnc-ESM1-1:1
4.0 lnc-ESM1-1:1
4.1 lnc-ESM1-1:1
5.0 lnc-ESM1-1:1
5.1 lnc-ACTBL2-36:15
5.2 lnc-ESM1-1:1