Transcript: lnc-ESM1-4:4

Basic information

LNCipedia transcript ID: lnc-ESM1-4:4 
LNCipedia gene ID: lnc-ESM1-4
Location (hg19): chr5:53955928-53999152
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 638 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000079799.1|HBMT00001162013.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -93.1865 non-coding 
CPAT coding probability 4.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ESM1-4:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-RP11-45H22.3.1-1:10
5.0 lnc-RP11-45H22.3.1-1:10
5.1 lnc-ACTBL2-40:4
5.2 lnc-ESM1-4:4