Transcript: lnc-ESR2-3:1

Basic information

LNCipedia transcript ID: lnc-ESR2-3:1 
LNCipedia gene ID: lnc-ESR2-3
Location (hg19): chr14:64825486-64846036
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 572 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: ENST00000556556; ENST00000556556.1; CTD-2555O16.1-001; OTTHUMT00000412166.1
Alternative gene names: ENSG00000258809; CTD-2555O16.1; ENSG00000258809.1; OTTHUMG00000171183.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -27.5791 non-coding 
CPAT coding probability 10.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ESR2-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ESR2-2:1
3.1 lnc-ESR2-3:1
4.0 lnc-ESR2-3:1
4.1 lnc-ESR2-3:1
5.0 lnc-ESR2-3:1
5.1 lnc-DHRS7-43:11
5.2 lnc-ESR2-3:1