Transcript: lnc-EVX2-3:2

Basic information

LNCipedia transcript ID: lnc-EVX2-3:2 
LNCipedia gene ID: lnc-EVX2-3
Ensembl Gene ID: ENSG00000229434
Ensembl Transcript ID: ENST00000412153
Location (hg19): chr2:177370973-177372430
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 495 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000412153; ENST00000412153.1; AC017048.1-001; OTTHUMT00000334066.1; NONHSAT075655
Alternative gene names: ENSG00000229434; AC017048.1; ENSG00000229434.1; OTTHUMG00000154142.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -60.2997 non-coding 
CPAT coding probability 4.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EVX2-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC009336.1-3:2
3.1 lnc-AC009336.1-3:2
4.0 lnc-AC009336.1-3:2
4.1 lnc-AC009336.1-3:2
5.0 lnc-AC009336.1-3:2
5.1 lnc-CHN1-32:2
5.2 lnc-EVX2-3:2