Transcript: lnc-EXOC2-29:3

Basic information

LNCipedia transcript ID: lnc-EXOC2-29:3 
LNCipedia gene ID: lnc-EXOC2-29
Location (hg19): chr6:131910-144885
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 727 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: ENST00000436899; ENST00000436899.1; LINC00266-3-001; OTTHUMT00000039617.2; NONHSAT105968; ENST00000436899.5
Alternative gene names: ENSG00000170590; NCRNA00266-3; ENSG00000170590.4; LINC00266-3; OTTHUMG00000014109.2; ENSG00000170590.8; dJ24O22.2; ENSG00000170590.9


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 40.6524 non-coding 
CPAT coding probability 25.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EXOC2-29:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-EXOC2-4:1
3.1 lnc-EXOC2-7:1
4.0 LINC00266-3:3
4.1 LINC00266-3:3
5.0 LINC00266-3:3
5.1 lnc-ECI2-214:3
5.2 lnc-EXOC2-29:3