Transcript: lnc-EXOSC9-4:2

Basic information

LNCipedia transcript ID: lnc-EXOSC9-4:2 
LNCipedia gene ID: lnc-EXOSC9-4
Ensembl Gene ID: ENSG00000249409
Ensembl Transcript ID: ENST00000505556
Location (hg19): chr4:121560264-121571951
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 530 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007607; ENST00000505556; ENST00000505556.1; RP11-501E14.1-001; OTTHUMT00000363938.1; NONHSAT098125
Alternative gene names: XLOC_003671; linc-EXOSC9-4; ENSG00000249409; RP11-501E14.1; ENSG00000249409.1; OTTHUMG00000161141.1; AC025741.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -40.2685 non-coding 
CPAT coding probability 7.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EXOSC9-4:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC079341.1-4:2
3.1 lnc-AC079341.1-4:2
4.0 lnc-AC079341.1-4:2
4.1 lnc-AC079341.1-4:2
5.0 lnc-AC079341.1-4:2
5.1 lnc-EXOSC9-14:2
5.2 lnc-EXOSC9-4:2