Transcript: lnc-EXTL1-1:1

Basic information

LNCipedia transcript ID: lnc-EXTL1-1:1 
LNCipedia gene ID: lnc-EXTL1-1
Ensembl Gene ID: ENSG00000284309
Ensembl Transcript ID: ENST00000640097
Location (hg19): chr1:26373156-26375590
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 941 bp
Exons: 2
Sources: Broad Institute; NONCODE v4; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00001962; NONHSAT001777; ENST00000640097.1
Alternative gene names: XLOC_000102; linc-PDIK1L-2; ENSG00000284309.1; AL391650.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -154.7134 non-coding 
CPAT coding probability 6.96% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EXTL1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-EXTL1-1:1
3.1 lnc-EXTL1-1:1
4.0 lnc-EXTL1-1:1
4.1 lnc-EXTL1-1:1
5.0 lnc-EXTL1-1:1
5.1 lnc-LIN28A-15:1
5.2 lnc-EXTL1-1:1