Transcript: lnc-EYA1-2:5

Basic information

LNCipedia transcript ID: lnc-EYA1-2:5 
LNCipedia gene ID: lnc-EYA1-2
Location (hg19): chr8:72443107-72504260
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 773 bp
Exons: 4
Sources: NONCODE v4; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: NONHSAT127184; ENST00000518177.2
Alternative gene names: ENSG00000253379.5; RP11-1102P16.1; AC099805.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -57.501 non-coding 
CPAT coding probability 1.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EYA1-2:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-EYA1-2:1
4.0 lnc-RP11-1102P16.1.1-2:2
4.1 lnc-RP11-1102P16.1.1-2:2
5.0 lnc-RP11-1102P16.1.1-2:2
5.1 lnc-CPA6-69:1
5.2 lnc-EYA1-2:5