Transcript: lnc-EYA1-2:6

Basic information

LNCipedia transcript ID: lnc-EYA1-2:6 
LNCipedia gene ID: lnc-EYA1-2
Location (hg19): chr8:72480408-72497435
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 837 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: NONHSAT127187; ENST00000521794.1
Alternative gene names: ENSG00000253379.5; RP11-1102P16.1; AC099805.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -3.9956 non-coding 
CPAT coding probability 3.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EYA1-2:6 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-EYA1-2:2
4.0 lnc-RP11-1102P16.1.1-2:3
4.1 lnc-RP11-1102P16.1.1-2:3
5.0 lnc-RP11-1102P16.1.1-2:3
5.1 lnc-CPA6-69:2
5.2 lnc-EYA1-2:6