Transcript: lnc-F11-2:18

Basic information

LNCipedia transcript ID: lnc-F11-2:18 
LNCipedia gene ID: lnc-F11-2
Ensembl Gene ID: ENSG00000250971
Ensembl Transcript ID: ENST00000507776
Location (hg19): chr4:187981253-187982084
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 421 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007691; ENST00000507776; ENST00000507776.1; RP11-696F12.1-001; OTTHUMT00000360171.1; NONHSAT099682
Alternative gene names: XLOC_003824; linc-ZFP42-8; ENSG00000250971; RP11-696F12.1; ENSG00000250971.1; OTTHUMG00000160313.1; AC108474.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -297.5707 non-coding 
CPAT coding probability 3.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-F11-2:18 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-F11-4:1
3.1 lnc-F11-4:1
4.0 lnc-F11-3:3
4.1 lnc-F11-2:18
5.0 lnc-F11-2:18
5.1 lnc-F11-12:17
5.2 lnc-F11-2:18