Transcript: lnc-F3-7:12

Basic information

LNCipedia transcript ID: lnc-F3-7:12 
LNCipedia gene ID: lnc-F3-7
Location (hg19): chr1:95104017-95285713
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 809 bp
Exons: 5
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000224081.3|ENST00000442418.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -99.9089 non-coding 
CPAT coding probability 0.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-F3-7:12 no no no no

Available literature

  1. Kumar (2013), Human disease-associated genetic variation impacts large intergenic non-coding RNA expression., PLoS Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 LINC01057:27
5.0 LINC01057:27
5.1 lnc-CNN3-5:12
5.2 lnc-F3-7:12