Transcript: lnc-F3-7:19

Basic information

LNCipedia transcript ID: lnc-F3-7:19 
LNCipedia gene ID: lnc-F3-7
Location (hg19): chr1:95138492-95198114
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 820 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT004608
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 0.2351 non-coding 
CPAT coding probability 9.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-F3-7:19 no no no no

Available literature

  1. Kumar (2013), Human disease-associated genetic variation impacts large intergenic non-coding RNA expression., PLoS Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-F3-2:7
4.0 LINC01057:10
4.1 LINC01057:10
5.0 LINC01057:10
5.1 lnc-CNN3-5:19
5.2 lnc-F3-7:19