Transcript: lnc-F3-7:22

Basic information

LNCipedia transcript ID: lnc-F3-7:22 
LNCipedia gene ID: lnc-F3-7
Location (hg19): chr1:95099361-95104114
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 733 bp
Exons: 4
Sources: NONCODE v4
Alternative transcript names: NONHSAT004602
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -134.8045 non-coding 
CPAT coding probability 11.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-F3-7:22 no no no no

Available literature

  1. Kumar (2013), Human disease-associated genetic variation impacts large intergenic non-coding RNA expression., PLoS Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-F3-2:9
4.0 LINC01057:14
4.1 LINC01057:14
5.0 LINC01057:14
5.1 lnc-CNN3-5:22
5.2 lnc-F3-7:22