Transcript: lnc-F3-7:25

Basic information

LNCipedia transcript ID: lnc-F3-7:25 
LNCipedia gene ID: lnc-F3-7
Location (hg19): chr1:95086707-95089740
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2272 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: TCONS_00000576; ENST00000435559; ENST00000435559.1; RP11-86H7.7-001; OTTHUMT00000029604.1; NONHSAT004601
Alternative gene names: XLOC_000922; linc-F3-4; ENSG00000235565; RP11-86H7.7; ENSG00000235565.1; OTTHUMG00000010719.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -159.0629 non-coding 
CPAT coding probability 28.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-F3-7:25 no no no no

Available literature

  1. Kumar (2013), Human disease-associated genetic variation impacts large intergenic non-coding RNA expression., PLoS Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-F3-2:1
3.1 lnc-F3-2:1
4.0 LINC01057:17
4.1 LINC01057:17
5.0 LINC01057:17
5.1 lnc-CNN3-5:25
5.2 lnc-F3-7:25