Transcript: lnc-FAM110B-1:9

Basic information

LNCipedia transcript ID: lnc-FAM110B-1:9 
LNCipedia gene ID: lnc-FAM110B-1
Location (hg19): chr8:59129760-59132420
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1510 bp
Exons: 2
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT126775; FPKM1_group_31380_transcript_2
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -236.664 non-coding 
CPAT coding probability 1.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM110B-1:9 no no no no

Available literature

  1. Wang (2016), Transcriptome Analysis of Long Noncoding RNAs in Toll-Like Receptor 3-Activated Mesenchymal Stem Cells., Stem Cells Int


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM110B-1:9
4.0 lnc-FAM110B-1:9
4.1 lnc-FAM110B-1:9
5.0 lnc-FAM110B-1:9
5.1 lnc-SDCBP-8:8
5.2 lnc-FAM110B-1:9