Transcript: lnc-FAM120B-3:5

Basic information

LNCipedia transcript ID: lnc-FAM120B-3:5 
LNCipedia gene ID: lnc-FAM120B-3
Ensembl Gene ID: ENSG00000273100
Ensembl Transcript ID: ENST00000610240
Location (hg19): chr6:170493905-170494884
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 980 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000610240.1
Alternative gene names: ENSG00000273100.1; RP11-302L19.3; AL596442.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -34.4787 non-coding 
CPAT coding probability 11.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM120B-3:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM120B-3:5
4.0 lnc-FAM120B-3:5
4.1 lnc-FAM120B-3:5
5.0 lnc-FAM120B-3:5
5.1 lnc-SYTL3-131:5
5.2 lnc-FAM120B-3:5