Transcript: lnc-FAM160A1-4:1

Basic information

LNCipedia transcript ID: lnc-FAM160A1-4:1 
LNCipedia gene ID: lnc-FAM160A1-4
Ensembl Gene ID: ENSG00000248991
Ensembl Transcript ID: ENST00000507949
Location (hg19): chr4:152840620-152865085
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 488 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007660; ENST00000507949; ENST00000507949.1; RP11-73G16.2-001; OTTHUMT00000365883.1; NONHSAT098777
Alternative gene names: XLOC_003736; linc-ARFIP1-6; ENSG00000248991; RP11-73G16.2; ENSG00000248991.1; OTTHUMG00000161726.1; AC097375.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -176.6189 non-coding 
CPAT coding probability 0.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM160A1-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM160A1-3:1
3.1 lnc-FAM160A1-4:1
4.0 lnc-FAM160A1-4:1
4.1 lnc-FAM160A1-4:1
5.0 lnc-FAM160A1-4:1
5.1 lnc-ARFIP1-12:2
5.2 lnc-FAM160A1-4:1