Transcript: lnc-FAM160B1-1:1

Basic information

LNCipedia transcript ID: lnc-FAM160B1-1:1 
LNCipedia gene ID: lnc-FAM160B1-1
Ensembl Gene ID: ENSG00000228484
Ensembl Transcript ID: ENST00000436932
RefSeq ID: NR_120628
Location (hg19): chr10:116524547-116539662
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2378 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000436932; ENST00000436932.1; RP11-106M7.1-001; OTTHUMT00000050497.1; NONHSAT016462; NR_120628; NR_120628.1
Alternative gene names: ENSG00000228484; RP11-106M7.1; ENSG00000228484.1; OTTHUMG00000019090.1; AL137025.1; LOC101927692


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.0795 non-coding 
CPAT coding probability 3.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM160B1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM160B1-1:1
3.1 lnc-FAM160B1-1:1
4.0 lnc-FAM160B1-1:1
4.1 lnc-FAM160B1-1:1
5.0 lnc-FAM160B1-1:1
5.1 lnc-VTI1A-29:1
5.2 lnc-FAM160B1-1:1