Transcript: lnc-FAM162A-2:7

Basic information

LNCipedia transcript ID: lnc-FAM162A-2:7 
LNCipedia gene ID: lnc-FAM162A-2
RefSeq ID: NR_125405
Location (hg19): chr3:122135053-122162094
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 621 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_125405; NR_125405.1
Alternative gene names: LOC102723582


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 8.3352 non-coding 
CPAT coding probability 6.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM162A-2:7 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM162A-2:7
4.0 lnc-FAM162A-2:7
4.1 lnc-FAM162A-2:7
5.0 lnc-FAM162A-2:7
5.1 lnc-DTX3L-5:2
5.2 lnc-FAM162A-2:7