Transcript: lnc-FAM172A-7:1

Basic information

LNCipedia transcript ID: lnc-FAM172A-7:1 
LNCipedia gene ID: lnc-FAM172A-7
Ensembl Gene ID: ENSG00000249776
Ensembl Transcript ID: ENST00000513779
Location (hg19): chr5:91767910-91996570
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 339 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009726; ENST00000513779; ENST00000513779.1; RP11-133F8.2-003; OTTHUMT00000370023.1; NONHSAT102774
Alternative gene names: XLOC_004925; linc-ARRDC3-1; ENSG00000249776; RP11-133F8.2; ENSG00000249776.1; OTTHUMG00000162673.1; ENSG00000249776.5; AC124854.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -57.9371 non-coding 
CPAT coding probability 4.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM172A-7:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM172A-7:1
3.1 lnc-FAM172A-7:1
4.0 lnc-FAM172A-7:1
4.1 lnc-FAM172A-7:1
5.0 lnc-FAM172A-7:1
5.1 lnc-ANKRD34B-178:7
5.2 lnc-FAM172A-7:1