Transcript: lnc-FAM172A-7:2

Basic information

LNCipedia transcript ID: lnc-FAM172A-7:2 
LNCipedia gene ID: lnc-FAM172A-7
Ensembl Gene ID: ENSG00000249776
Ensembl Transcript ID: ENST00000512210
Location (hg19): chr5:91745963-91975204
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 511 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009725; ENST00000512210; ENST00000512210.1; RP11-133F8.2-002; OTTHUMT00000370022.1; NONHSAT102773; ENST00000512210.5
Alternative gene names: XLOC_004925; linc-ARRDC3-1; ENSG00000249776; RP11-133F8.2; ENSG00000249776.1; OTTHUMG00000162673.1; ENSG00000249776.5; AC124854.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -259.1841 non-coding 
CPAT coding probability 4.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM172A-7:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM172A-7:2
3.1 lnc-FAM172A-7:2
4.0 lnc-FAM172A-7:2
4.1 lnc-FAM172A-7:2
5.0 lnc-FAM172A-7:2
5.1 lnc-ANKRD34B-178:8
5.2 lnc-FAM172A-7:2