Transcript: lnc-FAM182B-2:1

Basic information

LNCipedia transcript ID: lnc-FAM182B-2:1 
LNCipedia gene ID: lnc-FAM182B-2
Location (hg19): chr20:25982172-25982935
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 443 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00028032; ENST00000437782; ENST00000437782.1; RP4-760C5.2-001; OTTHUMT00000078469.1; NONHSAT079208
Alternative gene names: XLOC_013711; linc-ZNF337-8; ENSG00000225160; RP4-760C5.2; ENSG00000225160.1; OTTHUMG00000032140.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -9.2599 non-coding 
CPAT coding probability 0.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM182B-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM182B-2:1
3.1 lnc-FAM182B-2:1
4.0 lnc-FAM182B-2:1
4.1 lnc-FAM182B-2:1
5.0 lnc-FAM182B-2:1
5.1 lnc-CST4-67:1
5.2 lnc-FAM182B-2:1