Transcript: lnc-FAM19A5-5:1

Basic information

LNCipedia transcript ID: lnc-FAM19A5-5:1 
LNCipedia gene ID: lnc-FAM19A5-5
Ensembl Gene ID: ENSG00000229275
Ensembl Transcript ID: ENST00000446364
Location (hg19): chr22:48537359-48539046
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 668 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00029439; ENST00000446364; ENST00000446364.1; LL22NC03-121E8.3-001; OTTHUMT00000317553.1; NONHSAT087369
Alternative gene names: XLOC_014277; linc-FAM19A5-3; ENSG00000229275; LL22NC03-121E8.3; ENSG00000229275.1; OTTHUMG00000150318.1; BX284656.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -67.061 non-coding 
CPAT coding probability 20.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM19A5-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM19A5-5:1
3.1 lnc-FAM19A5-5:1
4.0 lnc-FAM19A5-5:1
4.1 lnc-FAM19A5-5:1
5.0 lnc-FAM19A5-5:1
5.1 lnc-GRAMD4-11:1
5.2 lnc-FAM19A5-5:1