Transcript: lnc-FAM20C-3:25

Basic information

LNCipedia transcript ID: lnc-FAM20C-3:25 
LNCipedia gene ID: lnc-FAM20C-3
Location (hg19): chr7:161662-165438
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3557 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT118607
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -59.703 non-coding 
CPAT coding probability 33.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM20C-3:25 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM20C-9:1
4.0 lnc-FAM20C-9:1
4.1 lnc-FAM20C-3:25
5.0 lnc-FAM20C-3:25
5.1 lnc-GPER1-44:27
5.2 lnc-FAM20C-3:25