Transcript: lnc-FAM20C-5:2

Basic information

LNCipedia transcript ID: lnc-FAM20C-5:2 
LNCipedia gene ID: lnc-FAM20C-5
Location (hg19): chr7:80303-80886
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 245 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00013285; NONHSAT118572
Alternative gene names: XLOC_005952; linc-FAM20C-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.1716 non-coding 
CPAT coding probability 4.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM20C-5:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM20C-5:2
3.1 lnc-FAM20C-5:2
4.0 lnc-FAM20C-5:2
4.1 lnc-FAM20C-5:2
5.0 lnc-FAM20C-5:2
5.1 lnc-GPER1-46:3
5.2 lnc-FAM20C-5:2