Transcript: lnc-FAM217A-1:8

Basic information

LNCipedia transcript ID: lnc-FAM217A-1:8 
LNCipedia gene ID: lnc-FAM217A-1
Location (hg19): chr6:4016675-4019294
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2368 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00012055; NONHSAT107266
Alternative gene names: XLOC_005587; linc-C6orf145-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 12.2238 non-coding 
CPAT coding probability 0.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM217A-1:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C6orf146-1:2
3.1 lnc-C6orf146-1:2
4.0 lnc-C6orf146-1:2
4.1 lnc-C6orf146-1:2
5.0 lnc-C6orf146-1:2
5.1 lnc-ECI2-13:8
5.2 lnc-FAM217A-1:8