Transcript: lnc-FAM222B-2:2

Basic information

LNCipedia transcript ID: lnc-FAM222B-2:2 
LNCipedia gene ID: lnc-FAM222B-2
Location (hg19): chr17:27188242-27188752
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 511 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000582320.1; MIR451B-001; OTTHUMT00000446722.2
Alternative gene names: ENSG00000264066.1; MIR451B; OTTHUMG00000179497.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -70.7711 non-coding 
CPAT coding probability 10.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM222B-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FLOT2-1:1
4.0 lnc-FLOT2-1:1
4.1 lnc-FLOT2-1:1
5.0 lnc-FLOT2-1:1
5.1 lnc-SLC6A4-62:2
5.2 lnc-FAM222B-2:2