Transcript: lnc-FAM229A-4:1

Basic information

LNCipedia transcript ID: lnc-FAM229A-4:1 
LNCipedia gene ID: lnc-FAM229A-4
Ensembl Gene ID: ENSG00000233775
Ensembl Transcript ID: ENST00000448134
Location (hg19): chr1:32814795-32816264
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 687 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000501; ENST00000448134.1; RP4-811H24.9-001; OTTHUMT00000020212.3; NONHSAT002199
Alternative gene names: XLOC_000776; linc-MARCKSL1; ENSG00000233775.1; RP4-811H24.9; OTTHUMG00000007633.4; AL109945.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -114.8845 non-coding 
CPAT coding probability 0.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM229A-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP4-811H24.6.1-1:1
3.1 lnc-RP4-811H24.6.1-1:1
4.0 lnc-RP4-811H24.6.1-4:1
4.1 lnc-RP4-811H24.6.1-4:1
5.0 lnc-RP4-811H24.6.1-4:1
5.1 lnc-RNF19B-15:1
5.2 lnc-FAM229A-4:1