Transcript: lnc-FAM229B-1:1

Basic information

LNCipedia transcript ID: lnc-FAM229B-1:1 
LNCipedia gene ID: lnc-FAM229B-1
Ensembl Gene ID: ENSG00000237234
Ensembl Transcript ID: ENST00000425503
Location (hg19): chr6:112476523-112479534
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 393 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000425503.2
Alternative gene names: ENSG00000237234.6; RP1-142L7.5; ENSG00000237234.7; Z99289.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -319.9441 non-coding 
CPAT coding probability 0.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM229B-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-C6orf225-1:9
4.1 lnc-C6orf225-1:9
5.0 lnc-C6orf225-1:9
5.1 lnc-WISP3-1:11
5.2 lnc-FAM229B-1:1