Transcript: lnc-FAM236B-4:1

Basic information

LNCipedia transcript ID: lnc-FAM236B-4:1 
LNCipedia gene ID: lnc-FAM236B-4
RefSeq ID: NR_120494
Location (hg19): chrX:72001689-72002484
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 453 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000445437; ENST00000445437.1; RP1-172N19.1-002; OTTHUMT00000086424.1; NONHSAT137510; NR_120499; NR_120494; NR_120494.1
Alternative gene names: ENSG00000229583; RP1-172N19.1; ENSG00000229583.1; OTTHUMG00000035613.1; LOC100132304


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -130.3606 non-coding 
CPAT coding probability 6.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM236B-4:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PHKA1-1:1
3.1 lnc-PHKA1-1:1
4.0 lnc-PHKA1-4:1
4.1 lnc-PHKA1-4:1
5.0 lnc-PHKA1-4:1
5.1 lnc-PHKA1-4:1
5.2 lnc-FAM236B-4:1