Transcript: lnc-FAM236D-1:1

Basic information

LNCipedia transcript ID: lnc-FAM236D-1:1 
HGNC Gene Symbol: lnc-FAM236D-1    
HGNC Full Gene Name: family with sequence similarity 226 member B
RefSeq ID: NR_026595
Location (hg19): chrX:72161568-72163589
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2023 bp
Exons: 1
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_026595; NR_026594; NR_026595.2
Alternative gene names: FAM226A


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -28.6703 non-coding 
CPAT coding probability 80.05% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-FAM236D-1:1 yes no no no

Available literature

  1. Chen (2006), Identification of a new cancer/testis gene family, CT47, among expressed multicopy genes on the human X chromosome., Genes Chromosomes Cancer
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PABPC1L2A-2:1
4.0 lnc-PABPC1L2A-2:1
4.1 lnc-PABPC1L2A-2:1
5.0 lnc-PABPC1L2A-2:1
5.1 lnc-PHKA1-68:1
5.2 lnc-FAM236D-1:1