Transcript: lnc-FAM236D-2:1

Basic information

LNCipedia transcript ID: lnc-FAM236D-2:1 
LNCipedia gene ID: lnc-FAM236D-2
Location (hg19): chrX:72027259-72028044
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 451 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000458170; ENST00000458170.1; RP11-69A21.2-002; OTTHUMT00000057213.2; NONHSAT137511
Alternative gene names: ENSG00000225396; RP11-69A21.2; ENSG00000225396.1; OTTHUMG00000021819.2; ENSG00000225396.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -83.1135 non-coding 
CPAT coding probability 5.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM236D-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DMRTC1-2:1
3.1 lnc-DMRTC1-2:1
4.0 lnc-DMRTC1-2:1
4.1 lnc-DMRTC1-2:1
5.0 lnc-DMRTC1-2:1
5.1 lnc-PHKA1-5:1
5.2 lnc-FAM236D-2:1