Transcript: lnc-FAM241A-2:1

Basic information

LNCipedia transcript ID: lnc-FAM241A-2:1 
LNCipedia gene ID: lnc-FAM241A-2
Ensembl Gene ID: ENSG00000248656
Ensembl Transcript ID: ENST00000510034
Location (hg19): chr4:112561651-112569964
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 610 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007594; ENST00000510034; ENST00000510034.1; RP11-255I10.2-001; OTTHUMT00000363879.1; NONHSAT097831
Alternative gene names: XLOC_003648; linc-C4orf32-2; ENSG00000248656; RP11-255I10.2; ENSG00000248656.1; OTTHUMG00000161125.1; AC083795.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -94.4248 non-coding 
CPAT coding probability 2.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM241A-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C4orf32-2:1
3.1 lnc-C4orf32-2:1
4.0 lnc-C4orf32-2:1
4.1 lnc-C4orf32-2:1
5.0 lnc-C4orf32-2:1
5.1 lnc-LRIT3-12:1
5.2 lnc-FAM241A-2:1