Transcript: lnc-FAM43A-3:1

Basic information

LNCipedia transcript ID: lnc-FAM43A-3:1 
HGNC Gene Symbol: lnc-FAM43A-3    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1968
Ensembl Gene ID: ENSG00000237222
Ensembl Transcript ID: ENST00000423318
RefSeq ID: NR_037891
Location (hg19): chr3:194429150-194502897
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3647 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000423318.1; AC090505.6-001; OTTHUMT00000342738.1; NONHSAT094123; NR_037891; NR_037891.1
Alternative gene names: ENSG00000237222.2; AC090505.6; OTTHUMG00000156020.1; ENSG00000237222.3; LINC01968; LOC100507391


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -111.8431 non-coding 
CPAT coding probability 14.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM43A-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM43A-3:1
4.0 lnc-FAM43A-3:1
4.1 lnc-FAM43A-3:1
5.0 lnc-FAM43A-3:1
5.1 lnc-MUC20-3:4
5.2 lnc-FAM43A-3:1