Transcript: lnc-FAM43A-3:3

Basic information

LNCipedia transcript ID: lnc-FAM43A-3:3 
HGNC Gene Symbol: lnc-FAM43A-3    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1968
Ensembl Gene ID: ENSG00000237222
Ensembl Transcript ID: ENST00000455796
Location (hg19): chr3:194489535-194500387
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 432 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Hangauer et al., 2013; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000455796; ENST00000455796.1; AC090505.3-001; OTTHUMT00000342764.1; NONHSAT094126; FPKM1_group_22690_transcript_1
Alternative gene names: ENSG00000244576; AC090505.3; ENSG00000244576.1; OTTHUMG00000156024.1; ENSG00000237222.3; AC090505.6; LINC01968


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -105.394 non-coding 
CPAT coding probability 3.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM43A-3:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM43A-2:1
3.1 lnc-FAM43A-3:3
4.0 lnc-FAM43A-3:3
4.1 lnc-FAM43A-3:3
5.0 lnc-FAM43A-3:3
5.1 lnc-MUC20-3:6
5.2 lnc-FAM43A-3:3