Transcript: lnc-FAM43A-5:1

Basic information

LNCipedia transcript ID: lnc-FAM43A-5:1 
LNCipedia gene ID: lnc-FAM43A-5
Ensembl Gene ID: ENSG00000238031
Ensembl Transcript ID: ENST00000427064
Location (hg19): chr3:194548619-194553321
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 464 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005707; ENST00000427064; ENST00000427064.1; AC090505.1-001; OTTHUMT00000342735.1; NONHSAT094129
Alternative gene names: XLOC_002986; linc-MUC20-11; ENSG00000238031; AC090505.1; ENSG00000238031.1; OTTHUMG00000156017.1; AC090505.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -189.8983 non-coding 
CPAT coding probability 0.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM43A-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM43A-4:1
3.1 lnc-FAM43A-5:1
4.0 lnc-FAM43A-5:1
4.1 lnc-FAM43A-5:1
5.0 lnc-FAM43A-5:1
5.1 lnc-MUC20-25:2
5.2 lnc-FAM43A-5:1